##########################################################################
#                                                                        #
#  This file is part of GeneSyst.                                        #
#                                                                        #
#  Copyright (C) 2004-2009                                               #
#    CNRS (Centre National de la Recherche Scientifique)                 #
#    INSA (Institut National des Sciences Appliquees)                    #
#                                                                        #
#  you can redistribute it and/or modify it under the terms of the       #
#  CeCILL License (for Ce[a] C[nrs] I[nria] L[logiciel] L[ibre]),        #
#  version 2.                                                            #
#                                                                        #
#  It is distributed in the hope that it will be useful,                 #
#  but WITHOUT ANY WARRANTY; without even the implied warranty of        #
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the          #
#  CeCILL License for more details. The license is provided in           #
#  french and in english in the Licences directory.                      #
##########################################################################

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                 GeneSyst Installation (29 08 2007)
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Prerequisite : 
  * a Java virtual machine version 1.6 ou more

      With Ubuntu : sudo apt-get install sun-java6-jre
      elsewhere http://java.sun.com


  * The atelierB or B4free :

       http://www.atelierb.eu/
    or http://www.b4free.com/

  * GraphViz :

      with Fedora (as root) : yum install graphviz
      with Ubuntu : sudo apt-get install graphviz
      elsewhere : http://dag.wieers.com/packages/graphviz/
  

  * In case of use of B4free : the "expect" tool is required

      with Fedora (as root) : yum install expect
      with Ubuntu : sudo apt-get install expect


Note : GeneSyst is based on Grappa (AT&T), BoB (LIG) and JBTools (LIFC), 
but these ones are inside the GeneSyst JAR archive.


Installation :

1- Get the file GeneSyst.tar.gz: 

    https://gforge.inria.fr/projects/genesyst/


2- Extract the archive:

    tar -xzvf GeneSyst.tar.gz

     
3- Launch the installation script install.sh.

    cd GeneSyst
    ./install.sh

   ########
   # Be carreful !!!!
   #   You need to be inside the GeneSyst directory to launch the script
   ########
   
    
     
   Follow instructions.
   This script just generate files: 
    -> ~/bin/GeneSyst
    -> ~/bin/GeneSyst-tui
    -> geneSyst/ConfigurationGeneSyst.java

   The first one is the script to call to execute GeneSyst in graphical mode.

   The second one is the script to call to execute GeneSyst in text mode.

   The last one contains configuration variables of GeneSyst. This file is 
   generated, compiled and added inside the genesyst.jar archive.
   
   In case of problems during installation, you can restart the install 
   script as many time as you want or edit by hand the generated 
   ConfigurationGeneSyst.java files.

     
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|   For all information please ask it to:                              |
|                          Nicolas.Stouls@insa-lyon.fr                 |
|   or                                                                 |
|          http://gforge.inria.fr/projects/genesyst/                   |
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